Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015948242.1_cds_XP_016489559.1_80073
CDS Infomation

[gene=LOC107809439] [db_xref=GeneID:107809439] [protein=UPF0061 protein azo1574-like] [protein_id=XP_016489559.1] [location=join(40720..41049,42225..42334,42418..42474,42554..42853,43207..43454,44292..44598,44675..44948,45729..45983)] [gbkey=CDS]
Sequence

ATGCAAATGCTTTCTCGCATTTCAGCTTCATCCACCGCTCTCTTCCACCTCCGTTCTTCT
CTTCTCCGACCCAGATTTTCTTTTCACCCAAACAACCCCTTTTCACTCCCAATTCAACCC
CATCACCGCCGTCTATTATTTTCTTCATCTATGGACTCAGCTACTGCTTCCACCGTTGAT
TCAGTTGCTGACAATTTCAAGAAACAAAGTTTAGAAAATAATGATAGCAGCAATAGCAAA
CGTTTGTTGAAACTAGAAGAGCTTAATTGGGATCATTCTTTTGTTCGTGAACTTCCTGCT
GATCTAAGAACCGATACCATCCCAAGAGAGGTATTGCATGCTTGCTATACAAAAGTGTTG
CCTTCTGTAGAGGTGGAGAATCCCCAGCTCGTTGTGTGGTCAGAATCAGTAGCAGAGTTA
CTTGAGTTGGATCCTAAAGAATTTGAGAGGCCTGGTTTTCCACTTCTGTTCTCAGGGGCA
TCACCTTTAGTGGGAGCTGTGCCTTATGCCCAGAACTATGGAGGACATCAGTTTGGGACG
TGGGCCGGTCAGCTAGGTGATGGTCGAGCAATAACTCTTGGAGAGGTTTTGAATTCAAAA
TCCGAAAGGTGGGAGCTGCAGCTAAAGGGTGCTGGGAAGACCCCATATAGCCGTTTTGCT
GATGGTCTCGCAGTGCTTCGGAGTAGTATTCGGGAATTCCTCTGCAGTGAAGCAATGCAC
AGCCTTGGAATCCCAACTACAAGAGCACTCTGTCTTGTAACGACAGGAAAAGATGTCACT
AGGGACATGTTTTATGATGGGAACCCGAAGGATGAGCCTGGTGCAATTGTCTGTAGAGTT
GCTCAATCCTTCCTGCGTTTTGGTTCTTACCAACTACATGCCTCTAGGGGTAAAAAGGAT
CTTGAGATTGTGCGTACTTTAGCAGACTATGCCATTAGATATCACTTCCCCCATCTAGAG
AACATGAGCAAGAGTGAAAGCATATCATTCAGCACAGGCGAAGAAGATGATTCGGCTGTG
GATTTAACTTCAAACAAATATGCAGCATGGGCAGTGGAAGTTGCTGAGCGGACTGCTTCT
ATGATTGCAAGGTGGCAAGGTGTTGGGTTCACACACGGAGTGATGAATACTGATAACATG
AGTGTGTTAGGCCTCACCATTGATTACGGCCCTTTTGGATTCTTAGATGCGTTTGATCCG
AGTTACACGCCAAATACCACTGATCTACCTTACAGAAGATACTGTTTTGCAAATCAGCCG
GATATAGGTTTATGGAATGTTGCTCAGTTTGCTAAAACTCTATCTACTGCAGAGTTGCTA
AATGATAAGGAGTCAAATTATGTCATGGAGAGGTATGGCATCAAATTTATGGACGACTAT
CAAGCTATCATGATGAAAAAGCTTGGTTTGGCTAAGTACAATAAACAAATGATTGGTGAT
CTACTTAAGAATATGGCTGTTGATAAAGTTGATTACACCAACTTCTTCCGATTGCTATCA
AACGTCAAGGCCGATCCTACAATTCCAGCAGAACAGTTACTGATTCCTCTGAAAGCTGCT
CTTTTGGATATTGGTATGGAACGCAAGGAAGCTTGGACAAGCTGGGTGAAATCCTACATA
CAGGAGCTGTCTACTAGTGGTGTATCGGACCAGGAGAGAAAGGCCTCCATGAATTCTGTA
AATCCAAAGTACATCCTTAGAAACTACCTATGCCAAAGCGCGATTGATGCAGCTGAACAA
GGCGACTTTGGGGAGGTCCGACGACTACTGAAAGTTATGCAATATCCATTTGATGAACAA
CCTGGCATGGAGAAGTACGCTCGTCTGCCTCCAGCTTGGGCTTATCGTCCAGGCGTAGGC
ATGCTTTCTTGTTCCTCATGA

Peptide Sequence

PEP ID

XP_016489559.1
PEP Infomation

PREDICTED: UPF0061 protein azo1574-like [Nicotiana tabacum]
Sequence

MQMLSRISASSTALFHLRSSLLRPRFSFHPNNPFSLPIQPHHRRLLFSSSMDSATASTVD
SVADNFKKQSLENNDSSNSKRLLKLEELNWDHSFVRELPADLRTDTIPREVLHACYTKVL
PSVEVENPQLVVWSESVAELLELDPKEFERPGFPLLFSGASPLVGAVPYAQNYGGHQFGT
WAGQLGDGRAITLGEVLNSKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMH
SLGIPTTRALCLVTTGKDVTRDMFYDGNPKDEPGAIVCRVAQSFLRFGSYQLHASRGKKD
LEIVRTLADYAIRYHFPHLENMSKSESISFSTGEEDDSAVDLTSNKYAAWAVEVAERTAS
MIARWQGVGFTHGVMNTDNMSVLGLTIDYGPFGFLDAFDPSYTPNTTDLPYRRYCFANQP
DIGLWNVAQFAKTLSTAELLNDKESNYVMERYGIKFMDDYQAIMMKKLGLAKYNKQMIGD
LLKNMAVDKVDYTNFFRLLSNVKADPTIPAEQLLIPLKAALLDIGMERKEAWTSWVKSYI
QELSTSGVSDQERKASMNSVNPKYILRNYLCQSAIDAAEQGDFGEVRRLLKVMQYPFDEQ
PGMEKYARLPPAWAYRPGVGMLSCSS

Transcript Sequence

Gene sequence data has not been registered.